Logo-aim
Arch Iran Med. 2022;25(9): 600-608.
doi: 10.34172/aim.2022.95
  Abstract View: 166
  PDF Download: 165

Original Article

Targeted Next Generation Sequencing Revealed Novel Variants in the PKD1 and PKD2 Genes of Iranian Patients with Autosomal Dominant Polycystic Kidney Disease

Maryam Hosseinpour 1 ORCID logo, Fariba Ardalani 1 ORCID logo, Marzieh Mohseni 1 ORCID logo, Maryam Beheshtian 1 ORCID logo, Sanaz Arzhangi 1, Shahrzad Ossareh 2, Hossein Najmabadi 1 ORCID logo, Ali Nobakht 3, Kimia Kahrizi 1* ORCID logo, Behrooz Broumand 4* ORCID logo

1 Genetics Research Center, University of Social Welfare and Rehabilitation Sciences, Tehran, Iran
2 Division of Nephrology, Department of Medicine, Hasheminejad Kidney Center, Iran University of Medical Sciences, Tehran, Iran
3 Department of Nephrology, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
4 Pars Advanced and Minimally Invasive Medical Manners Research Center, Pars Hospital, Tehran, Iran
*Corresponding Authors: Corresponding Author: Kimia Kahrizi, MD; Email: , Email: kahrizi@yahoo.com; Corresponding Author: Behrooz Broumand, MD; Email: , Email: v4broumand@yahoo.com

Abstract

Background: Autosomal dominant polycystic kidney disease (ADPKD), one of the common inherited disorders in humans, is characterized by the development and enlargement of renal cysts, often leading to end-stage renal disease (ESRD). In this study, Iranian ADPKD families were subjected to high-throughput DNA sequencing to find potential causative variants facilitating the way toward risk assessment and targeted therapy.

Methods: Our protocol was based on the targeted next generation sequencing (NGS) panel previously developed in our center comprising 12 genes involved in PKD. This panel has been applied to investigate the genetic causes of 32 patients with a clinical suspicion of ADPKD.

Results: We identified a total of 31 variants for 32 individuals, two of which were each detected in two individuals. Twenty-seven out of 31 detected variants were interpreted as pathogenic/likely pathogenic and the remaining 4 of uncertain significance with a molecular diagnostic success rate of 87.5%. Among these variants, 25 PKD1/2 pathogenic/likely pathogenic variants were detected in 32 index patients (78.1%), and variants of uncertain significance in four individuals (12.5% in PKD1/2). The majority of variants was identified in PKD1 (74.2%). Autosomal recessive PKD was identified in one patient, indicating the similarities between recessive and dominant PKD. In concordance with earlier studies, this biallelic PKD1 variant, p.Arg3277Cys, leads to rapidly progressive and severe disease with very early-onset ADPKD.

Conclusion: Our findings suggest that targeted gene panel sequencing is expected to be the method of choice to improve diagnostic and prognostic accuracy in PKD patients with heterogeneity in genetic background.


Cite this article as: Hosseinpour M, Ardalani F, Mohseni M, Beheshtian M, Arzhangi S, Ossareh S, et al. Targeted next generation sequencing revealed novel variants in the pkd1 and pkd2 genes of iranian patients with autosomal dominant polycystic kidney disease. Arch Iran Med. 2022;25(9):600-608. doi: 10.34172/aim.2022.95
First Name
 
Last Name
 
Email Address
 
Comments
 
Security code


Abstract View: 167

Your browser does not support the canvas element.


PDF Download: 165

Your browser does not support the canvas element.

Submitted: 17 Jan 2022
Revision: 02 Mar 2022
Accepted: 10 Apr 2022
ePublished: 01 Sep 2022
EndNote EndNote

(Enw Format - Win & Mac)

BibTeX BibTeX

(Bib Format - Win & Mac)

Bookends Bookends

(Ris Format - Mac only)

EasyBib EasyBib

(Ris Format - Win & Mac)

Medlars Medlars

(Txt Format - Win & Mac)

Mendeley Web Mendeley Web
Mendeley Mendeley

(Ris Format - Win & Mac)

Papers Papers

(Ris Format - Win & Mac)

ProCite ProCite

(Ris Format - Win & Mac)

Reference Manager Reference Manager

(Ris Format - Win only)

Refworks Refworks

(Refworks Format - Win & Mac)

Zotero Zotero

(Ris Format - Firefox Plugin)